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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … PhD research. And for the first time in this program’s history, two interns returned to re-engage with their mentors … Evolution of the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on … at Lawrence Berkeley National Laboratory, is located in one of those counties. The shelter-in-place order has since been … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close … Merced Genomics Internship Program, and is part of  Mark Sistrom’s lab at the UC Merced School of Natural Sciences. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: … member as PI? A(nswer: The FICUS program is open to scientists at international institutes.  Applicants do not need to …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … genome for a new genus level member of the novel candidate phylum Goldbacteria. They’ve proposed the name  …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California (UC) San Diego, … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also …
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives
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Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli
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