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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, …
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JGI-USCCN Strain Sequencing Opportunity
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and …
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Back in the Lab: the 2023 Summer Intern Experience
… This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 …
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A Powerful Technique to Study Microbes, Now Easier
… Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots …
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The Fungi That Survive In Antarctica
… Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh conditions. And their … are working with scientists from around the world – and the JGI – to understand them better. …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key … bringing this mobilome into light, and opening up new options for engineering these microbes in the future. Join Sarah … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely … sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer … how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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