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JGI@25: Building a Better Bean
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the …
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JGI@25: Using Team Science to Build Communities Around Data
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families …
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Improving the Cacao Genome and Phytozome
… to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha …
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Community Science Program
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… environmental or biological samples (like cell media or lake water) without doing a metabolite extraction? Or are … However, we don’t do this because they typically contain salts and other contaminants that interfere with … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA … approaches applied to relatively tractable samples like lakes and rivers could help fill in the gaps,” she added. …
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Promoting the Power of Viral Metagenomics
… found throughout the planet’s oceans can exert great influence on earth’s carbon and nitrogen cycles. … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led … the genes that are present in a given species).  “This is a great example of developing a large-scale genome …
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How to Target a Microbial Needle within a Community Haystack
… retrieve and characterize their genomes. The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … microbes within metagenome samples and associate their sequences with their roles within their environments. …
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Sequencing the fungal tree of life
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Genome sequence of the palaeopolyploid soybean
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The trajectory of microbial single-cell sequencing
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