Results

An Integrated Dataset to Understand Ecosystem Interaction
… Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined …
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Hiroshi Otani
… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. …
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Overview of the Genomes OnLine Database (GOLD)
… gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Streamlining Regulon Identification in Bacteria
… assay. The second step consists of RNA sequencing of whole transcriptomes, and the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re using an attentive deep …
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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Plant genotype and rhizobia strain combinations strongly influence the transcriptome under heavy metal stress conditions in Medicago truncatula
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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