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Identifying the Microbial Cleanup Crew at a Superfund Site
… leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI … (NIH).  … View the Dataset on IMG/M data portal … Datasets …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Identifying genomic data use with the Data Citation Explorer
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics … scaling up genomics analysis to peta-bases, and enabling data-driven science. This is a group of computational …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The … isotope to it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or … steps. Ultimately, researchers found their updated strategy required one-sixth the labor of the manual process, …
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Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … to the terrestrial ecosystems exposed fungi to numerous new ecological niches and triggered rapid diversification of …
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The Expanding Universe of Methane Metabolisms in Archaea
… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … IMG because the database already contains metagenome datasets from a variety of environments, as well as tools for … common ancestor between Archaea and Eukarya.   One genome, two metabolic pathways “Up to this point, most phylogenomic …
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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Forest Fungi, Seagrass, and a New View of Symbiosis
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together … interactive panel discussions, workshops, and informal networking events. JGI will present both a genome center talk …
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Methanogens implicated by DNA evidence
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