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… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs …

… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … Pacific Northwest National Laboratory, Northern Arizona University, Argonne National Laboratory and the JGI.  With … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …

… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … and poplar, a team led by Hui-Ling (Sunny) Liao of the University of Florida collected forest samples of poplar and …

A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be … sphagnum  genomes from plants selected by a team from Duke University, then tested for heat and pH stress by Oak Ridge …

Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … across Europe and Asia. CABBI partners include the University of California, Berkeley and the HudsonAlpha …

… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … — then a postdoctoral associate in Ed DeLong’s group at the University of Hawaii at Manoa — and colleagues were able to …

A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the … and his advisor Ian Wheeldon, a chemical engineer at the University of California, Riverside. The team also included …

Maize produces a family of compounds that protects it against infections — using … enzymes. The Science Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. Even though scientists have … study’s senior author Alisa Huffaker, a biologist at the University of California, San Diego. The findings could help …

Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … across Europe and Asia. CABBI partners include the University of California, Berkeley and the HudsonAlpha …

A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … specimen. Stephen DiFazio, plant biologist at West Virginia University (WVU), led the study’s international team, which … some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. …

For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually … team led by Daniele Armaleo, a biologist at Duke University, investigated Gray’s Cup lichen  (Cladonia grayi) …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These … After analyzing the original sequence, Gary Stacey of the University of Missouri said he and his colleagues had …