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Effects of Polar Light Cycle on Microbial Food Web
Ocean long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The work was …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… base are microscopic, photosynthetic algae. But human-induced climate change , a new study suggests, is displacing … dominated by prokaryotes (microorganisms without a defined nucleus). Colder waters nearer the poles, however, tend to … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory — with a desire to understand …
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Marine Microbe Contains Multitudes
… at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), through the JGI …
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Streamlining Regulon Identification in Bacteria
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Transcription factors control when and how … in Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has developed a …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… evolution and rapid changes in both genome content and structure following a genome duplication event that occured … biology courses across the globe for insights into reproductive, space and genome biology . The undeniable power of … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) took on the Open …
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JGI at the AGU Fall Meeting
… in accelerating research and tips for submitting successful proposals: Collaborate With a U.S. DOE User … Open-Call Opportunities, and Important Tips for Submitting Successful Proposals December 9  4:15pm PT (online) Town Hall … Center, Poster Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial metabolic trajectories …
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Extracting the Secrets of Secondary Metabolites
… the functions of the biosynthetic gene clusters that produce them. The Impact Secondary metabolites are microbial compounds produced in response to hardship or competition. They make up … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) can then employ …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the … (VEGA) Symposium , which will take place later this year in Berkeley, Calif. Convening the “viral ecogenomics” …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… to include resources from Lawrence Livermore and Lawrence Berkeley National Labs. Patrinos shared vivid memories in … the human genome.  By 2000, a drafted human genome was produced by a joint effort between public and private sectors … multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in … Researcher (Biology & Biochemistry) (2014-2023) Lawrence Berkeley National Laboratory Outstanding Scientific … Human Intestinal Tract ( MetaHIT ); Community Cyber-infrastructure for Advanced Marine Microbial Ecology Research and …
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The Power of One, Amplified
… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), employed …
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