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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… coastal waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada (CICESE) in her … more advanced in my understandings than I would be at this stage without the internship and mentorship that followed. I …
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Creating an Energy Market for Miscanthus
What grass is a prized ornamental and a bioenergy plant? Meet Miscanthus , an attractive addition to …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its … range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the … of Science User Facility, has discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its …
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NeLLi — Symposium on New Lineages of Life
… and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a … of these new lineages will provide new cornerstones for research in the areas of bioenergy and biomedicine, as well as biotechnology. NeLLi …
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Gotta Catch 'Em Gall
Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer …
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Virus-Microbe Interactions of Mud Island Mangroves
Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) program , which awards graduate students … influence carbon cycling in coastal mangroves. His work centers on samples collected on Mud Island – “it’s …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… tolerance, and other traits that make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and … using switchgrass samples from these gardens, a team led by researchers at the University of Texas at Austin produced a … of field data and genetic information has allowed the research team to associate climate adaptations with …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … and the National Energy Research Scientific Computing Center (NERSC) (https://ror.org/05v3mvq14), are DOE Office …
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The More the Merrier: Making the Case for Plant Pan-genomes
… many plants, including agricultural staples and candidate bioenergy feedstock crops, are recent polyploids. Crop … traits. Given the importance of polyploidy in plants, researchers have sought to learn the origins, evolution and … B. stacei and  B. distachyon , a relative of the candidate bioenergy crop switchgrass and a JGI Flagship Plant. All …
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Gut Fungi: Unexpected Source of Novel Chemicals
… at Pacific Northwest National Laboratory. The team’s research at both the JGI and EMSL was enabled by the … project was supported by a grant from Santa Barbara Cottage Hospital and the University of California, Santa … Frank Fellowship. The authors acknowledge support from the Center for Scientific Computing from the CNSI, MRL: an NSF …
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2022 Progress Report
… seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … leading integrative genome science user facility enabling researchers to solve the world’s evolving energy and …   Mission  The mission of the JGI is to provide the global research community with access to the most advanced …
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Learning to Look
… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group . … of the  National Energy Research Scientific Computing Center , another DOE Office of Science user facility.   … …
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