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Activity-targeted metaproteomics uncovers rare syntrophic bacteria central to anaerobic community metabolism
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria … research studies that use SIP. Researchers at Lawrence Livermore National Laboratory and the U.S. Department of Energy … steps. Ultimately, researchers found their updated strategy required one-sixth the labor of the manual process, …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, … coming out of that conference, and there should be a few more in the feed, that I’m releasing along with this one, at …
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Boosting Small Molecule Production in Super “Soup”
… engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due … National Laboratory, indicates metabolic pathways could be more productive outside the cell environment, which would be … Additionally, the team also used a similar rewiring strategy to produce the small molecules glycerol and …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many … the wider Berkeley Lab. “We’re shifting now to our net-zero strategy. And so we’re looking at the overall greenhouse gas … where food trucks arrive each day. “Our goal is to create more green spaces at the Lab,” Ciobanu said. To do that, …
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The GreenCut2 Resource, a Phylogenomically Derived Inventory of Proteins Specific to the Plant Lineage*
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Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi
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The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage
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User Executive Committee Charter
… and the annual user meeting. The UEC also acts as a liaison to the user community and the broader scientific community … UEC responsibilities include: Make recommendations to the JGI regarding calls for proposals, including focus … technical capabilities offered, including areas where more or less capacity is needed, new capabilities desired, …
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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Uncovering Sequence and Structural Characteristics of Fungal Expansin‐Related Proteins With Potential to Drive Substrate Targeting
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic … Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s ecosystems, researchers must … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can …
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