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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … to the multinational consortium of researchers that sequenced and assembled the simplest cotton genome ( G. …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, …
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UC Merced Interns Reflect on Their JGI Summer Projects
… summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. Department of … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang Click the image to watch the video … Intern: Brendan Blasius (undergraduate) Mentor: Guohong "Albert" Wu Click the image to watch the video …
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The Power of One, Amplified
… metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large … genomes then amplified and sequenced individually, offering scientists the opportunity to apply population genomics …
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The trajectory of microbial single-cell sequencing
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ClaMS: A Classifier for Metagenomic Sequences
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New Research Sheds Light on Diversity in the Deep Sea
… array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  … This means they hold clues for understanding how life thrives in extreme environments. They also produce a … the makeup and functioning of a given microbial community. Scientists with the U.S. Department of Energy Joint Genome …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … 1000 reference genomes from across the fungal tree of life. Martin is one of the project leads. After starting …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes … was really happening,” recalled Sean Gallaher, a research scientist in Sabeeha Merchant’s lab and first author of the … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … microbes within metagenome samples and associate their sequences with their roles within their environments. …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial … the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … internal analytical standards to accurately measure environmental microbiome activity levels.This functional assay …
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