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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is produced in environments without oxygen through a process called methanogenesis. Methanogenic microorganisms … capable of methanogenesis —  it’s the metabolic process these little makers rely on to survive. Now, new … as to if these microorganisms were actually engaging in the process within the environment and, if so, to what extent.  …
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Promoting the Power of Viral Metagenomics
… can exert great influence on earth’s carbon and nitrogen cycles. Currently one of the best ways to study such viruses …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… from plants is the high cost and resource requirements of processing these sturdy materials, rumen microbes and their … essentially what makes them so powerful that they can process tough cell walls.  “The JGI was really leading the … sequenced DNA from rumen microbes involved in the digestion process.  “We wanted to find the enzymes that make the rumen …
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Supporting Global Research into Actinomycetes
… particular interest due to their complex developmental life cycles and diverse specialized metabolism. ( Hear …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the … Deputy Ray Turner. How extensive? Consider that the process of moving 250 people and their equipment from 4 … began more than three years ago. For JGIers, the moving process began in 2017 with annual one-day cleanups. During …
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Streamlining Regulon Identification in Bacteria
… is almost impossible, and the experimental process for doing so is laborious and complex. RIViT-seq technology simplifies this identification process. Multiple factors mediate transcription, including … a given transcription factor is resource-intensive and unscalable. To test the efficacy of RIViT-seq, researchers …
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A Powerful Technique to Study Microbes, Now Easier
… on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. …
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Natural Prodcast Episode 8: Eric Schmidt
… to it. Eric has done a lot of work on this RiPP process, and it turns out it’s pretty engineerable – you can … I personally knew who got really interested in “ribosomally processed peptides”. And, you know, we don’t need to get too …
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Chomping Toward Better Plastic Recycling
… So researchers are taking a look at how these critters process plastic, to improve plastic recycling by following …
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Pinning Down a Piece of Photosynthesis
… binds iron, and how that relates to the way  Synechocystis cycles carbon.  These experiments leveraged the DOE Office … piece of the photosynthesis that drives the ocean’s carbon cycles. Given that similar protein domains exist in plants …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of that modified chemical in any environment. Organisms who process the modified compound will have heavier DNA or RNA, … cycle nitrogen and carbon, or how freshwater ecosystems process methane and organic matter.  However, to get all of … offers, researchers must take on a fairly time-intensive process. The isotope labeling incubations can take hours to …
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UC Merced Interns Reflect on Their JGI Summer Projects
… new data visualization tools, to using natural language processing techniques to categorize genetic information. …
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