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Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies
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Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last …
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Taking Stock of the Known and Unknown Microbial Space
… microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an … sequence data generated over the past three decades, their study assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … on cone snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship … is on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail …
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Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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Large‐scale maps of variable infection efficiencies in aquatic Bacteroidetes phage‐host model systems
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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