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Sensitivity Analysis of Genome-Scale Metabolic Flux Prediction
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A predicted CRISPR-mediated symbiosis between uncultivated archaea
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Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions
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Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions
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Computationally Classifying Fungal Lifestyles
… known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle based on 6 gene clusters showed a … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they …
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Hyperdiverse, bioactive, and interaction-specific metabolites produced only in co-culture suggest diverse competitors may fuel secondary metabolism of xylarialean fungi.
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Mission
… and AI-driven analyses that convert biological information into actionable insights and solutions. … conversion efficiency, and discover microbial pathways for producing biofuels, biochemicals, and other high-value … reveal biological routes to recover, reuse, and transform critical minerals. This knowledge supports developing …
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Cataloging the Microbes that Manage the Health of River Systems
… States. They also provided multiple access points to the information. The team harnessed a community-science program to … available, river-focused microbial resource that provides information at multiple scales from genes to the community … 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare results across …
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … Project: “ Investigating metabolic network of symbiosis using genome-scale metabolic models ” Pedro Antonio Perez … “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : “I got to learn about skills and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … to the financial sector — whether to identify studies and protocols or analyze and predict market trends. “Genomes do … various terrains, and microbial life adapted to extreme conditions studied through the Antarctic Lake project. The …
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User Advisory Committees
… to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … on the Institute’s strategic, scientific, technical, informatics, management, and operational objectives. Serving …
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Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines
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