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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, the … microbes whose presence or absence can impact the planet’s nutrient cycles. While most organism’s genetic information …
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David Goodstein
With a background in experimental and computational surface physics, Dr. … et al., 2020.  Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Igor Grigoriev
CA … Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson … Microbio 2:17087. Mondo et al (2017)  Widespread adenine N6-methylation of active genes in fungi.  Nature Genet.  … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … recent study  published in the journal  Nature , a team led by researchers at the U.S. Department of Energy (DOE) Joint … the host communities and their roles in carbon and other nutrient cycles. “This is the first study to take a more …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome … in human and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … was a group lead at Stanford Human Genome Center directed by Richard Myers, and among the Center staff that moved to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for … experiments can show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a catch: SIP …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … to understanding the roles of microorganisms in regulating nutrient cycles, as well as gaining insights into potential … expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  …
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JGI Welcomes New UEC Members
Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that … and career stages. The election period concluded on October 21. The results are in and JGI extends a warm welcome to the …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth … for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within … spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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