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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer
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Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Congratulations to the 2023 Highly Cited Researchers from the JGI … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … tool called geNomad that identifies and classifies mobile genetic elements based upon their gene content and their …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … 25  Dothideomycetes species, and also provides more information about speciation events. … The work conducted by …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale … isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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Gene Coexpression Connectivity Predicts Gene Targets Underlying High Ionic-Liquid Tolerance in Yarrowia lipolytica
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Spray‐induced gene silencing to identify powdery mildew gene targets and processes for powdery mildew control
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… which microbes are present in a sample, to generate data about which organisms are active, and which microbes are … methane and organic matter.  However, to get all of the information that SIP offers, researchers must take on a … around the world, the team have now published a  Minimum Information for any Stable Isotope Probing Sequence …
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Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
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