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Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … populations respond to virus infections, researchers are using Altiarchaea as a model system to study virus-host …
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Genomic sequencing of single microbial cells from environmental samples
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … conditions, or it could couple the two metabolisms by using sulfite to oxidize methane and hydrogen. McKay …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … depth required). Methylation detection currently only works using subread data, PacBio is working on support to use CCS …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … reference sequence of the complex switchgrass genome , using samples from common gardens growing across the …
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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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Diversity of Sordariales Fungi: Identification of Seven New Species of Naviculisporaceae Through Morphological Analyses and Genome Sequencing
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Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … LLMs aren’t just for understanding the human language and using it to communicate with machines. It has been applied … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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