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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico
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Comparative metagenomics reveals impact of contaminants on groundwater microbiomes
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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights … 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi
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Natural Prodcast Episode 4: Nancy Keller
… challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … multi-institutional research team that combined field data with a reference switchgrass genome to associate … that hosted a series of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos …
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Promoting the Power of Viral Metagenomics
… published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront …
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