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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. … Focus Area (SFA), supported by the Terrestrial Ecosystem Science (TES) program within the DOE Office of … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place …
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve …
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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You Can Move, But You Can’t Hide
… the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … and metabolic potential of the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  Microbiome … and OCE-2049478 and DBI-2047598 to K.A. We thank the Department of Energy Joint Genome Institute (Community Science …
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Advances on genomics, biology, ecology and evolution of Brachypodium, a bridging model grass system for cereals and biofuel grasses
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Natural Prodcast
… products and the science and scientists of secondary metabolism. Natural products, secondary metabolites, and … another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on its goals in — and builds out its capabilities for — secondary metabolism research, “Natural …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and …
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