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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE … in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. … SMC is the most comprehensive BGC database …
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Chomping Toward Better Plastic Recycling
We know all kinds of things about plastic – except, how to break it down for recycling. … So researchers are taking a look at how these critters process plastic, to improve plastic recycling by following …
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts … them to test composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with … version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …
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Depth distributions of nitrite reductase (nirK) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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