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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that feed … saprotrophs in the forest. White rot can break down the cellulose, hemicellulose, and lignin in plant cell walls, …
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Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… make use of JGI’s breadth of capabilities while also highlighting collaborative research of a scale exceeding a single lab’s capacity. Additionally, the call recommended … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
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A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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David Goodstein
… extensive structural mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … A:  It depends on the soil. Typically soils that have a high clay content are not well suited for metabolomics … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … nitrogen, but the viruses that infect Altiarchaea cause the cells to burst. This action triggers subsurface carbon … archaeal viruses and the corresponding CRISPR arrays of a highly abundant carbon fixer in Earth’s crust”. The work …
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High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as … first author of the study, the lysate produced BDO at higher productivity rates than were noted inside the cell. … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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