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Taxonomic and Functional Diversity of a Quercus pyrenaica Willd. Rhizospheric Microbiome in the Mediterranean Mountains
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Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) … dataset was particularly important for characterizing fungal genes, because, unlike bacteria, they often carry …
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Help from Citrus’ Bitter, Hardier Cousin
… to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … and a blotchy yellowing of leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day … They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … of plants.  Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … project . They also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis.
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … hot springs, an extreme environment with low genetic diversity that would help narrow down potential sources of …
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Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Extreme dimensions — how big (or small) can tailed phages be?
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Ultraconservation identifies a small subset of extremely constrained developmental enhancers
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