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Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Prokaryotic responses to a warm temperature anomaly in northeast subarctic Pacific waters
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
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Prokaryotic community profiles at different operational stages of a Greek solar saltern
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for … and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a perfect storm in …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … the JGI provided DNA synthesis capabilities to enable functional testing of these enzymes. Yasuo Yoshikuni, head … evolved separately for billions of years have some common signatures of muli-substrate specificity. However, different …
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Population genomics of a forest fungus reveals high gene flow and climate adaptation signatures
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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
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Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids
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