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JGI Portals
… … GOLD is a web resource for comprehensive access to information regarding genome and metagenome sequencing … potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database offers the largest publicly … sequenced algal genomes and genome annotations generated by the JGI and by others. The web portal allows users to …
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Len Pennacchio
… in human and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast … … About the Deputy of Genomic Technologies … Selected Publications … Awards and Honors …
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SPRUCE-ing Up Science
… serve their quests related to processing RNA-sequencing information. According to Lawrence, this summer project … As a part of his internship, he was regularly tasked by his mentor to present his project work and navigate a … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Natural Prodcast Episode 16: Marcy Balunas
And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … you bring a unique perspective too? And so I was fascinated by – we spend a lot of time as natural products chemists and … look like.  DAN: For sure.  MARCY: We have so much information about what the Actinomycete biosynthetic gene …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida … . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this … of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science . …
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iPHoP: A Matchmaker for Phages and their Hosts
… program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome … they often took on: generating virus-host predictions via multiple routes, then considering different suggested … will strengthen future virus-host predictions. This information could open the door to improving crop yields and a …
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A Community Resource for Secondary Metabolite Researchers
… core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … biosynthetic gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( …
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Finding the Fermenters
… community brings together the data resources enabled by the DOE Biological and Environmental Research (BER) … They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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JGI at the AGU Fall Meeting
… through a single research proposal: Maximize Your Research by Harnessing Multiple Scientific User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning … stable isotope approaches for resolving nitrogen transformations in the critical zone” 8:03am Convention Center …
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Data Ecosystem
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Olpidium, The Key to the Origin of Terrestrial Fungi
Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich … Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Matt Blow
… epigenome and other functional genomics datasets generated by JGI user science projects. … BS in Biochemistry and … et al. 2013. Fine Tuning of Craniofacial Morphology by Distant-Acting In Vivo Enhancers. Science 3426157. Blow … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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