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Doubling Down on Known Protein Families
… to study the entire genetic makeup of these communities via whole genome sequencing of the samples, without being … unknowns’ because they aren’t similar to anything we’ve already defined.  “A huge percentage — around 30–50% of the … functions. Yet these efforts were limited to the realm of already-known protein sequences.  “In this endeavor, we have …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… MetaHipMer2. The computing program enables a more detailed read of the massive Lake Mendota data set, illuminating not …
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Genome interplay in the grain transcriptome of hexaploid bread wheat
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Ancient hybridizations among the ancestral genomes of bread wheat
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Nikos Kyrpides
… Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Selected Publications …
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The JGI Data Portal: Improving User Experience
… . Although the Data Portal is currently only accessible via Phytozome, the improvements it encompasses are more …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… the door to measuring real-time changes in cyclic di-GMP via live cell imaging. Summary From digestive tracts to …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… secondary metabolites, called terpenes. Terpenes are made via a tangled network of enzymes in plants. To better … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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iPHoP: A Matchmaker for Phages and their Hosts
… they often took on: generating virus-host predictions via multiple routes, then considering different suggested …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … and analysis of their data at the time. Following the publication of their paper in 2011, Dr. Sekimoto from …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… with your questions ([email protected]) Carefully read our proposal call description and ensure your idea is … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … look at the PI’s track record to make sure that they have already worked with this type of data set. Having a co-PI with …
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Data Ecosystem
… also work with our partners to ensure platforms are future-ready for advancements enabled by artificial intelligence …
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