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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued … genome analysis, sequence-based genetic methods, and comparative developmental biology. In addition to this …
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Accelerating Metagenomics Discoveries with Deep Learning
… Metagenomic data, or DNA sequencing data gathered from whole samples rather than single cells or isolated strains, … learning, data is passed through algorithms organized into multiple interconnected layers. The architecture of these … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector …
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BOTany methods: accessible automation for plant synthetic biology
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. … to learn more about our seven science program — their areas of focus, major initiatives and more.  …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … for  Citrus , appeals in other ways. It better tolerates cold, withstands pests, and, especially tantalizing, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria
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Host-specific adaptation in Fusarium oxysporum correlates with distinct accessory chromosome content in human and plant pathogenic strains.
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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