Results

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint … in CRISPR sequences to target the virus and release attack enzymes in the form of Cas enzymes to cut the DNA and …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … (SIP) proved to vastly reduce labor and improve results. Applying this method to the study of a particular fungi, … Work at Lawrence Livermore National Laboratory was conducted under the auspices of the U.S. DOE under …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place … Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI … toward integrative biology. Researchers who are applying genomic sequence information to BER-funded …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling … evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … that showcase our collaborations and capabilities to enable great science that will help solve energy and … microbes gave researchers access to a collection of novel enzymes — many of which contained interesting properties in …
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