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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … become public as well? A:  Currently NEON doesn’t have a method for hosting that data. NEON recommends you host your …
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Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs
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Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National … to small individual workshops. Of common interest is the method development to study active sites or single cells in …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … likely to work well for metabolomics.  Q:  What tool or method is being used to integrate the metabolomics and …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … but we have also pushed the boundaries by applying AI methodologies to unravel their roles,” Pavlopoulos said. …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … Various fixation protocols were also tested as part of the method development, and researchers found that ethanol …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast … to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … expression, when used in addition to traditional methods, can offer scientists a more colorful palette of …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … functional characteristics. When they tested the screen method on a microbial community from geothermal hot springs, …
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Unlocking the potential of designed microbial consortia: A breakthrough for sustainable waste management and climate resilience
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Trent Northen
Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining … JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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