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Introducing New Members of the JGI User Executive Committee
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Learning to Look
… the way we currently isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in … 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply getting much better at seeing them, which means we can now study their biology much more meaningfully,” Roux noted of …
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The Expanding Universe of Methane Metabolisms in Archaea
… publicly available metagenome data provided by the other study co-authors, and reconstructed from these 10 … methane metabolisms Of the 10 MAGs reconstructed in the study, five were from undersampled or previously undescribed … and William Inskeep are co-authors on the Borrel et al. study described above, and also led a separate study that is …
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Doubling Down on Known Protein Families
… — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights … new functions,” said  Nikos Kyrpides , senior author of the study and head of the JGI’s  Microbiome Data Science group . … Microbial communities are also incredibly difficult to study. Many of the microbes within them cannot be cultivated …
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining
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Decoding Yellowstone’s Microbial Mats
… team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial …
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Viruses Reprogram Cells into Different Virocells
… The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic … an experimental approach with a marine phage-host model to study virus-host-nutrient interactions. In  their study , which appeared in  The ISME Journal , they focused …
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When “The Blob” Made It Hotter Under the Water
… as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic …
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Promoting the Power of Viral Metagenomics
… every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than … and nitrogen cycles. Currently one of the best ways to study such viruses is by sequencing the bulk DNA or RNA …
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Defining a Pan-Genome for Antarctic Archaea
… learned to adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some … across East Antarctica. The implications of the current study are important both to understanding genomic variation … microbial ecologist Rick Cavicchioli and his team have been studying the haloarchaea that thrive in the very salty …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… outline the questions they asked – and answered – in the study that recently appeared in the Proceedings of the … ecological and evolutionary consequences. A previous study conducted by our research team surveying the genomic …
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