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… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … automated aspects of a commonly-used process for studying microbial communities, with results published in … microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. …

… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship … Finally, using transcriptomics, researchers were able to study which of the trees were turned on or off in response … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …

… Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the environmental … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of … and environments, including natural and agricultural soils, human- and animal-host associated, and ocean and …

… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities … also supports various CSP and FICUS user projects for the Metagenome Program. …