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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … step, numerous genes for antibiotic resistance and secondary metabolism would have been incorrectly attributed … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 …
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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MAGI: A Method for Metabolite Annotation and Gene Integration
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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … They play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel … Knowledgebase (KBase) also allows researchers to study how metabolites flow through and transform in algae. PhycoCosm …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … of prokaryotes and can form roughly 300 combinations of metabolites. To demonstrate the potential utility of the …
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Katherine Louie
… biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and Chemical Engineering.  DOI: …
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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … They play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel … Knowledgebase (KBase) also allows researchers to study how metabolites flow through and transform in algae. PhycoCosm …
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
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Sulfur metabolites that facilitate oceanic phytoplankton–bacteria carbon flux
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Metabolite release by nitrifiers facilitates metabolic interactions in the ocean
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