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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications The planet’s microbial diversity is immense, yet much of it remains … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies …
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JGI-UC Merced Interns Share Their 2021 Experiences
JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional … the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… food webs in cold, but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … point to this fundamental observation of cold and warm microbial networks, and just how clear and stark the …
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User Executive Committee
… on JGI policies and practices that affect users and their science including technical capabilities offered, proposal …
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Philympics 2021: Prophage Predictions Perplex Programs
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew …
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The Power of One, Amplified
… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, … microbial populations. The work appeared in The ISME Journal . Members of the Dunfield lab collected samples from …
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Microbial Community Structure and Functional Potential Along a Hypersaline Gradient
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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