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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for …
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Better Genome Editing for Bioenergy
… to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … goal of producing sustainable fuels from alternative sources. Moreover, the team says the approach they used to … to legend, Abraham Lincoln once said, “Give me six hours to chop down a tree and I will spend the first four …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … The cuttings included genotypes from the DOE BioEnergy Science Center (BESC), predecessor of  DOE’s Center for … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker …
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Integrating Experimentation with Data
Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated … for more details and registration information. Sign up for our newsletter , the JGI Primer, to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to …
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Picking Up Threads of Cotton Genomics
… underscores its value and importance in the fabric of our lives. In the United States, cotton production centers … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … portal  Phytozome , which is a community repository and resource for plant genomes. They are annotated with the JGI …
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The GreenCut2 Resource, a Phylogenomically Derived Inventory of Proteins Specific to the Plant Lineage*
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Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species
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Phylogenomic structure and speciation in an emerging model: the Sphagnum magellanicum complex (Bryophyta)
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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Rex Malmstrom
His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , … Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota)
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