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A parts list for fungal cellulosomes revealed by comparative genomics
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Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
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JGI Scientists Pen Genome Watch Articles
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and they agreed, providing three articles for the journal with Du Toit as their editor. The partnership has … researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive … topics that the JGI supports that advance DOE Office of Science Biological and Environmental Research (BER) … professor at Michigan State University. He studies fungal biodiversity, ecology, and evolution, with a focus on …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… propagated from cuttings represent a diverse collection sourced from half of the United States. As  reported January … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data …
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Sequencing the fungal tree of life
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Len Pennacchio
… and capabilities we offer JGI users to help advance their science. … a vision for future technical JGI directions for DOE User science. … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & … Fellow of the American Association for the Advancement of Science (AAAS) 2020- National Advisory Council, National …
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An Integrated Dataset to Understand Ecosystem Interaction
… between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization …
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A Plant Root Atlas for Tracking Developmental Trajectories
… datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader perspective:  …
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Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
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Gut Fungi: Unexpected Source of Novel Chemicals
… expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of … can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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