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Draft genomes and assemblies of the ectomycorrhizal basidiomycetes Scleroderma citrinum hr and S. yunnanense jo associated with chestnut trees
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed … as a class, the students learned about how to write a scientific paper. They wrote, edited, and rewrote a …
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Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific journal is the ultimate achievement. To get to … Wint’s other mentor and head of the JGI Fungal and Algal Program. Paying It Forward Wint, originally from …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and data mining, empowering … synthesis superpower. Through a series of case studies, JGI scientific users share how they’ve worked with the JGI DNA … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” … Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as well as our … program does for UC Merced students. He described it as “life changing” for the interns and loved the opportunities …
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Faunimonas pinastri gen. nov., sp. nov., an endophyte from a pine tree of the family Pleomorphomonadaceae, class Alphaproteobacteria
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic … and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to large … generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by …
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