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Robert Bowers
… uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes … studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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Events
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Introducing New Members of the JGI User Executive Committee
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JGI@25: Cow Rumen and the Early Days of Metagenomics
Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy plant cell … requirements of processing these sturdy materials, rumen microbes and their enzymes are an optimal study subject that …
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How Maize Makes An Antibiotic Cocktail
… was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for sesquiterpenoids, National … Foundation Plant-Biotic Interactions Program (grant no. 1758976 to E.S. and P.Z.) for diterpenoids, by a DOE Joint … Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided by the …
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Extracting the Secrets of Secondary Metabolites
… to integrate large genetic payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers … researchers are no longer limited to using model host microbes; theoretically, any microbe can serve as the … compounds of interest. Using CRAGE to domesticate target microbes, users of the U.S. Department of Energy (DOE) Joint …
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You Can Move, But You Can’t Hide
… the interactions that happen between tiny organisms (microbes) located in soils and water. MGEs like viruses and … Office of Biological and Environmental Research (BER) (89233218CNA000001 to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… environmental or biological samples (like cell media or lake water) without doing a metabolite extraction? Or are … Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice on normalizing … You used 4 replicates for transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a …
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When “The Blob” Made It Hotter Under the Water
… predictive models on how climate change may impact marine microbes and by extension, the ocean’s capacity to act as a … saw populations shift. Smaller picoplankton and free-living microbes that can fix carbon dioxide replaced organic matter …
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Yasuo Yoshikuni
Postdoctoral training in Biochemistry, University of Washington … Shen et al., Mitochondrial ATP generation is … Award 2012 Jane Coffin Childs Memorial Fund, Fellow 2007-2008 Editorial board member of Synthetic Biology (Oxford …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by … they all process loads of tough plants. Thanks to gut microbes — namely, anaerobic fungi — these animals are able … . In an herbivore’s poop sample, there’s a whole heap of microbes, each potentially contributing to powerful biomass …
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