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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go beyond understanding which microbes …
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An Automated Tool for Assessing Virus Data Quality
… have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from …
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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Nigel Mouncey
… the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost … biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and … Secondary Metabolites Program head as well as our JGI Director. Click to learn more about the program's areas of focus, …
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Who We Are
… user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff … user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and part of the Biosciences Area. The … from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant organisms. We …
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The Power of One, Amplified
… by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. Their work showed that single cell genomics can add significant value to the other commonly used culture-independent sequencing … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline … first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … at this stage without the internship and mentorship that followed. I especially want to emphasize the inclusive, …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Different threats, same response
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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