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Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
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Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater
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A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … of Wisconsin-Madison and a co-investigator in the Great Lakes Bioenergy Research Center. Her research focus is … her institution and Bioenergy Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … algorithm, the search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying …
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Natural Prodcast
… about natural products and the science and scientists of secondary metabolism. Natural products, secondary … research, “Natural Prodcast” serves as an important line of communication to the scientific community. Host Dan … and future developments, and how the JGI can be part of that space.   …
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … of SIP experiments have generated plenty of insights, many studies don’t report the information needed to reuse and …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … example” of how a 1000 Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by …
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale … per year (but may be listed as co-PI on an unlimited number of proposals).  For accepted proposals, sequencing, …
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