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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Fungal Friends or Foes in Plant Roots
… relationships, an international team led by graduate student Fantin Mesny in Stéphane Hacquard’s group at the Max … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of the Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of Excellence on Plant Sciences (CEPLAS), both …
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Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the … clone 170/NA DNA Synthesis Constructs >10kb in size Gene clusters or pathways totaling more than 10kb in length …
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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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FICUS Overview
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …
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Biotech Partners
… programs that empower underrepresented high school students and graduates to step outside their boundaries and dream big. They encourage students to pursue personal, academic, and professional …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … domesticated bacterial strains with novel biosynthetic gene clusters (BGCs). BGCs make diverse molecules of value to … piece by Yoshikuni and JGI colleagues Jing Ke and Bing Wang. Yoshikuni’s team has also recently upgraded the CRAGE …
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Effects of Polar Light Cycle on Microbial Food Web
Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … water up top and anoxic water below. Cavicchioli and his team took samples from all three sections of the stratified … analyses at UNSW Sydney were performed on the computational cluster Katana, supported by the Faculty of Science. …
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