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Discovering untapped biochemistry in microorganisms from hidden corners
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Updated Virophage Taxonomy and Distinction from Polinton-like Viruses
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Assembly of Viral Metagenomes from Yellowstone Hot Springs▿ †
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Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring
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High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Learning to Look
… learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to … known to be affiliated with the Inoviridae. “What we’re really doing is looking for a particular gene found in all … now overhauls our perception of this virus group – from minor curiosities they become a prominent component of …
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Rex Malmstrom
Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made … bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he … mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … host to replicate. Sequencing genetic material directly from samples sidesteps these challenges, since it doesn’t … at the JGI led a team that combed datasets from around the world, finding over 125,000 partial and complete viral …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum …
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An Automated Tool for Assessing Virus Data Quality
… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … of the blind men who encounter an elephant for the first time. Based on the single body part each blind man touches – …
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Building on Experience, With a Twist?
The first time I did this internship in the summer of 2020, it was a time where the world literally stopped. …
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