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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research …
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DAP-seq Drives Robust Mapping of Gene Regulation
… bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first author on the … Advancing gene regulation mapping Previous methods to identify where transcription factors (TFs) — the proteins that …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” Neri … of efficient, automated approaches to analyze and classify sequence data at this scale is essential.”   …
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MycoCosm portal: gearing up for 1000 fungal genomes
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Plant Pan-Genomics Comes of Age
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is …
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Viruses Reprogram Cells into Different Virocells
… them. In the ocean, viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any …
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Game On: High School Students Drive Everglades Metagenomics Study
… of 2018, Jonathan Benskin was preparing to teach a second year A-Level Advanced International Certificate of Education … answers being, “It would take a team of Ph.D.’s over a year to do a project at this capacity.” Jonathan’s thought … is over and the students are preparing for their senior year, they will have to come back together as the paper goes …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 individual researchers from 67 … rank in the top 1% by citations for field and publication year are: Igor Grigoriev (Cross-field) Natalia Ivanova … in its resiliency, as well as a Nature Plants study identifying colonization patterns in eelgrass . Igor Grigoriev’s …
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Clades of huge phages from across Earth’s ecosystems
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First Monoploid Reference Sequence of Sugarcane
… the genes involved in sugar production and for identifying different variants on different chromosomes, … modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly complex given its estimated size of 10 billion bases (more than three times the size of the …
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JGI on the 2021 Highly Cited Researchers List
… rank in the top 1% by citations for field and publication year are: Igor Grigoriev Natalia Ivanova Nikos Kyrpides Dan … researchers were involved in, reported on over the last year: Jeremy Schmutz was part of a long-term … Woyke were among JGI staff who mentored students this past year, through programs including the JGI-UC Merced Genomics …
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