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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… the plant and illuminates the significant role sex plays in how the moss grows, stores carbon and responds to stress. … 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary component of peatlands, processes  … sequestration. Researchers wanted to better understand how sphagnum adapts to these varying topographies which …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… who discussed her work on transposable elements and how understanding these genes has helped pave the way for … her keynote. In 2012, Doudna published results indicating how CRISPR Cas-9 could be used as a DNA cleaver and gene … range of new questions — from basic research, like learning how to optimize the gene editing function of CRISPR-Cas9, to …
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An Integrated Dataset to Understand Ecosystem Interaction
… microbial partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  outlined in  … this massive and integrated data set will help identify how different elements of the ecosystem interact and respond …
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Gotta Catch 'Em Gall
… galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find …
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The Expanding Universe of Methane Metabolisms in Archaea
… “Therefore, determining under which form it emerged and how it gave rise to the different pathways we see today is … Borrel and Gribaldo said. “Overall, these results show a striking case of how metabolic diversity can emerge from tinkering of a …
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Mapping the Earth’s Hidden Fungal Kingdom
… Microbiology of nearly 2,000 of these genomes reveals just how much we still have to discover about Earth's fungal … facing scientists is both logistical and analytical. How can the research community systematically sample an … called it “a call to action for many communities” including educational partners, citizen scientists and the fungal …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … and integration with single-cell RNA sequencing reveals how transcription factors control gene expression and cell … single-cell gene expression maps, providing insight into how regulatory pathways control specific cell types. “A lot …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down … mining activities upstream and downstream of the Arkansas. However, recently, there’s been a major restoration effort. … invertebrate communities upstream and downstream, which is how the EPA, it’s one of the indices they use for stream …
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Annual Genomics of Energy & Environment Meeting
… gathering of leaders from diverse disciplines to highlight how they are addressing the world’s most pressing energy and environmental challenges.  The invited talks emphasize how the research infrastructure – DNA sequencing, synthesis, …
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JGI@25: Studying Sorghum’s Survival Skills
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … Both sugarcane and corn share this photosynthetic pathway. However, neither crop shares sorghum’s hardiness, so … sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as …
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