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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the DOE Systems …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … venomous hosts. She also facilitates the non-profit science communication and education organization The Biota Project …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop … Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day … researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) …
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Functional plasticity of HCO3 – uptake and CO2 fixation in Cupriavidus necator H16
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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JGI@25: Fueling Investigation into Methane-Making Microbes
… driving climate change. According to the Environmental Protection Agency , methane gas warms the atmosphere as much … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … to better understand microbial communities by looking at protein function within them. The work was led by a team of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI announces final round of 2022 Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … This shows that archaea may use CRISPR systems to protect against other, parasitic archaea. However, when  Ca . …
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