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… Metagenome Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … practices, development of standards and processes for data quality and sharing, and data workflows and management best … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore …

… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are … from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to …

… Metagenomic datasets could help map out microbial diversity hotspots … isolates, metagenome-assembled genomes (MAGs) with varying quality scores representing potential genomes, and nearly … 9.73% of the total estimated diversity of the available datasets. Efforts to recover MAGs by extracting data …

… S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral … . 8674:00585-7. Nayfach S et al. 2021. CheckV assesses the quality and completeness of metagenome-assembled viral …

… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … out the onerous SIP sample processing. Generating these datasets opens up the possibility of new insights across … efforts like these will help grow and improve high-quality datasets, enabling global insights from modeling, …

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics … Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s …