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User Advisory Committees
… effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) … Committee … Prokaryote Programs User Advisory Committee … Secondary Metabolites User Advisory Committee …
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …
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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics
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Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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Olpidium, The Key to the Origin of Terrestrial Fungi
… pressure on retaining the flagellum in the terrestrial ecosystems. Unfortunately, neither paper was able to resolve … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly …
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Chordate evolution and the three-phylum system
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Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes
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CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria
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Development of a Freeze-Dried CRISPR-Cas12 Sensor for Detecting Wolbachia in the Secondary Science Classroom
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. …
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
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