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2022 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … most advanced integrative genome science capabilities in support of the DOE’s research mission.     Director's …
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A Natural Mechanism Can Turbocharge Viral Evolution
… has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In … works to keep throwing the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… identified other bacteria and microbial processes that support PCE biodegradation. The results demonstrate that it … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
Tips: Contact us with your questions (jgi-jira+pmosupport@lbl.gov) Carefully read our proposal call … to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have …
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Dispatches From JGI Interns
… describe their deep dives into genomics, computational tools, and big data.  …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… type-strain deposits. All of these genome sequences and the tools to compare them are available on the JGI’s Integrated … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … DSMZ’s vast strain resource, but also yielding and supporting many high-impact publications ,” emphasized …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …
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2023 Progress Report
… we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global research community in studies of complex …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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Len Pennacchio
He is funded by DOE and through continued competitive grant support from NIH. … BA in Biology, Sonoma State University … the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …
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Single Cell Research Group
… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …
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