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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …
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The BioMart community portal: an innovative alternative to large, centralized data repositories
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Natural Prodcast Episode 1: The Primer, Part 1
Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … I kind of see it. DAN: So what we’ve got here is, I just grabbed a photo of a “biochemical pathways” chart. So if you …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ type-strain deposits. All of these genome sequences and the tools to compare them are available on the JGI’s Integrated … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly …
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