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A More Intuitive Phytozome Interface
… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST … and there are now much more powerful and flexible tools available for building high performance user …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … screens for characterization of new enzymes and use the data we generated to train machine learning models now …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in a …
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Natural Prodcast Episode 6: Marc Chevrette
… pathways. So that’s kind of how I fell down the rabbit hole. I was curious about what they were, what they … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 … stress. The first year’s results will be compared to data from additional years of sampling, which are currently …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ type-strain deposits. All of these genome sequences and the tools to compare them are available on the JGI’s Integrated … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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Integrating Microbial Community Data Into an Ecosystem‐Scale Model to Predict Litter Decomposition in the Face of Climate Change
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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A Plant Root Atlas for Tracking Developmental Trajectories
… and combining the information with previously published datasets. The work was  recently published in the journal  … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … “This represents the largest integration of single-cell datasets in plants and provides a foundation for still …
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