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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and cultivated microbes, … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate …
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Transcription Factor Family-Based Reconstruction of Singleton Regulons and Study of the Crp/Fnr, ArsR, and GntR Families in Desulfovibrionales Genomes
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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The ancient Salicoid genome duplication event: A platform for reconstruction of de Novo gene evolution in Populus trichocarpa
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights …
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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … can also act as a protective layer insulating permafrost from the warming regional temperatures. For this reason, the … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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A Catalog of Reference Genomes from the Human Microbiome
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Sequencing of Genomes from Environmental Single Cells
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the …
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