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Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi
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Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
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Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Swift CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. …
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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Jane Grimwood Named HudsonAlpha Genomics Chair
… she has continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited … to include: A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using … Biotechnology paper on the release of the high quality reference genome sequence of green millet ( Setaria viridis …
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Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar metabolomics analyses. For the … the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A Method for Metabolite …
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Making a Lichen Together
… to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . …
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JGI User Executive Committee Expands
… he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary … non-R1 institutions, now defined as those that don’t spend $50 million in annual research and don’t award at least 70 …
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