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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … crassa, and to identify and decide on the order in which this fungus breaks down plant cell wall materials including …
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Secondary Metabolites Advisory Committee
… teams on how to operate and manage the particular Science Program. …
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A Community Resource for Secondary Metabolite Researchers
Collaboratory encourages user engagement. The Science In addition to the core set of "primary … fields including biotechnology, medicine and agriculture. This comprehensive public repository of BGC sequences that … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed …
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Fungal & Algal Program User Advisory Committee
… & Algal Program Advisory Committees is chartered by the Science Program Heads and report back to them. The Committee …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … The work was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. … management and strategic objectives for the JGI’s data science, informatics and information technology (IT) activities and …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … Lab). And one of the tools that researchers can apply to study the transcription factors that control how genes are … a unique capability; no one else can do it in the world at this scale.” A bottleneck in the DAP-seq protocol, however, …
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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User Support
… out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities … analysis with the appropriate JGI analysis team. During this time, your Project Manager will: Coordinate JGI data …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and … the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics …
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